Original py-numpy

math/py-numpy/Makefile

@@ -0,0 +1,84 @@
+PORTNAME=	numpy
+PORTVERSION=	1.26.4
+PORTREVISION=	7
+PORTEPOCH=	1
+CATEGORIES=	math python
+MASTER_SITES=	PYPI \
+		https://numpy.org/doc/1.26/:doc
+PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
+DISTFILES=	numpy-${PORTVERSION}${EXTRACT_SUFX} \
+		numpy-html.zip:doc
+DIST_SUBDIR=	numpy-${PORTVERSION:R}
+EXTRACT_ONLY=	${DISTNAME}${EXTRACT_SUFX}
+
+MAINTAINER=	python@FreeBSD.org
+COMMENT=	The New Numeric Extension to Python
+WWW=		https://www.numpy.org/
+
+LICENSE=	BSD3CLAUSE
+LICENSE_FILE=	${WRKSRC}/LICENSE.txt
+
+TEST_DEPENDS=	${PYTHON_PKGNAMEPREFIX}pytest>=6.2.5:devel/py-pytest@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}hypothesis>=6.24.1:devel/py-hypothesis@${PY_FLAVOR} \
+		${PYTHON_PKGNAMEPREFIX}typing-extensions>=4.2.0:devel/py-typing-extensions@${PY_FLAVOR}
+
+USES=		compiler:c11 cpe fortran python:3.9+
+USE_PYTHON=	allflavors autoplist concurrent cython distutils
+
+GCCLIBDIR_CMDS=	${FC} -print-file-name=libgfortran.so | ${SED} -e s/libgfortran.so//
+LDFLAGS+=	-s
+PYDISTUTILS_BUILDARGS=		--fcompiler=gnu95
+PYDISTUTILS_CONFIGUREARGS=	--fcompiler=gnu95
+
+PIE_UNSAFE=	yes
+
+PORTDOCS=	*
+
+PORTSCOUT=	limit:^1\.
+
+OPTIONS_DEFINE=		DOCS SUITESPARSE
+OPTIONS_SINGLE=		BLASLIB
+OPTIONS_SINGLE_BLASLIB=	ATLAS NETLIB OPENBLAS
+OPTIONS_DEFAULT=	OPENBLAS SUITESPARSE
+SUITESPARSE_DESC=	Use AMD and UMFPACK in SuiteSparse
+
+ATLAS_USES=		blaslapack:atlas
+ATLAS_VARS=		BLASLIBS="ptf77blas, ptcblas" BLASNAME=atlas LAPACKLIBS=alapack LIBRARIES=atlas_libs
+NETLIB_LIB_DEPENDS=	libcblas.so:math/cblas
+NETLIB_USES=		blaslapack:netlib
+NETLIB_VARS=		BLASLIBS="blas, cblas" BLASNAME=atlas LAPACKLIBS=lapack LIBRARIES=atlas_libs
+OPENBLAS_USES=		blaslapack:openblas
+OPENBLAS_VARS=		BLASLIBS="openblas, gfortran" BLASNAME=openblas LAPACKLIBS="openblas, gfortran" LIBRARIES=libraries
+SUITESPARSE_LIB_DEPENDS=libumfpack.so:math/suitesparse-umfpack
+
+post-extract:
+	@${TOUCH} ${WRKSRC}/numpy/f2py/tests/src/temp
+	@${TOUCH} ${WRKSRC}/numpy/random/_examples/temp
+	@${TOUCH} ${WRKSRC}/numpy/core/tests/examples/temp
+
+pre-configure-SUITESPARSE-off:
+	@${REINPLACE_CMD} -e 's|:%%LOCALBASE%%/include/suitesparse||' ${WRKSRC}/site.cfg
+
+pre-configure:
+	@${REINPLACE_CMD} -e 's|%%FC%%|${FC}|' ${WRKSRC}/numpy/distutils/fcompiler/gnu.py
+	@${CP} ${FILESDIR}/site.cfg ${WRKSRC}/site.cfg
+	${REINPLACE_CMD} -e 's|%%LOCALBASE%%|${LOCALBASE}|g' \
+		-e 's|%%BLASLIBS%%|${BLASLIBS}|; s|%%BLASNAME%%|${BLASNAME}|' \
+		-e 's|%%LAPACKLIBS%%|${LAPACKLIBS}|; s|%%LIBRARIES%%|${LIBRARIES}|' \
+			${WRKSRC}/site.cfg
+	@${REINPLACE_CMD} -e "s|%%GCCLIBDIR%%|$$(${GCCLIBDIR_CMDS})|" ${WRKSRC}/site.cfg ${WRKSRC}/numpy/distutils/system_info.py
+
+do-configure:
+
+post-install:
+	${FIND} ${STAGEDIR}${PYTHON_SITELIBDIR} -name '*.so' | ${XARGS} ${STRIP_CMD}
+
+post-install-DOCS-on:
+	@${MKDIR} ${STAGEDIR}${DOCSDIR}
+	${UNZIP_NATIVE_CMD} -qo ${DISTDIR}/${DIST_SUBDIR}/numpy-html.zip -d ${STAGEDIR}${DOCSDIR}
+	@${RM} ${STAGEDIR}${DOCSDIR}/.buildinfo
+
+do-test:
+	@cd ${WRKSRC} && ${PYTHON_CMD} runtests.py
+
+.include <bsd.port.mk>

math/py-numpy/distinfo

@@ -0,0 +1,5 @@
+TIMESTAMP = 1718154974
+SHA256 (numpy-1.26/numpy-1.26.4.tar.gz) = 2a02aba9ed12e4ac4eb3ea9421c420301a0c6460d9830d74a9df87efa4912010
+SIZE (numpy-1.26/numpy-1.26.4.tar.gz) = 15786129
+SHA256 (numpy-1.26/numpy-html.zip) = 1dc88fc45a7709143b7b917e8e807e4985c41fe3fb7ee5fc55c3aeec5f369fdd
+SIZE (numpy-1.26/numpy-html.zip) = 25538887

math/py-numpy/files/patch-clang

@@ -0,0 +1,13 @@
+--- numpy/distutils/checks/cpu_avx512_spr.c.orig	2024-02-05 21:17:48 UTC
++++ numpy/distutils/checks/cpu_avx512_spr.c
+@@ -15,10 +15,6 @@ int main(int argc, char **argv)
+ 
+ int main(int argc, char **argv)
+ {
+-/* clang has a bug regarding our spr coode, see gh-23730. */
+-#if __clang__
+-#error
+-#endif
+     __m512h a = _mm512_loadu_ph((void*)argv[argc-1]);
+     __m512h temp = _mm512_fmadd_ph(a, a, a);
+     _mm512_storeu_ph((void*)(argv[argc-1]), temp);

math/py-numpy/files/patch-numpy-distutils-exec_command.py

@@ -0,0 +1,11 @@
+--- numpy/distutils/exec_command.py.orig	2021-05-08 18:35:28 UTC
++++ numpy/distutils/exec_command.py
+@@ -261,7 +261,7 @@ def _exec_command(command, use_shell=None, use_tee = N
+ 
+     if os.name == 'posix' and use_shell:
+         # On POSIX, subprocess always uses /bin/sh, override
+-        sh = os.environ.get('SHELL', '/bin/sh')
++        sh = '/bin/sh'
+         if is_sequence(command):
+             command = [sh, '-c', ' '.join(command)]
+         else:

math/py-numpy/files/patch-numpy-distutils-fcompiler-__init__.py

@@ -0,0 +1,11 @@
+--- numpy/distutils/fcompiler/__init__.py.orig	2021-05-09 10:38:00 UTC
++++ numpy/distutils/fcompiler/__init__.py
+@@ -171,7 +171,7 @@ class FCompiler(CCompiler):
+     # gnu95 compiler type when there are F90 sources.
+     suggested_f90_compiler = None
+ 
+-    compile_switch = "-c"
++    compile_switch = "-fPIC"
+     object_switch = "-o "   # Ending space matters! It will be stripped
+                             # but if it is missing then object_switch
+                             # will be prefixed to object file name by

math/py-numpy/files/patch-numpy-distutils-fcompiler-gnu.py

@@ -0,0 +1,35 @@
+--- numpy/distutils/fcompiler/gnu.py.orig	2021-05-08 21:14:06 UTC
++++ numpy/distutils/fcompiler/gnu.py
+@@ -79,7 +79,7 @@ class GnuFCompiler(FCompiler):
+             return None
+         return v[1]
+ 
+-    possible_executables = ['g77', 'f77']
++    possible_executables = ['%%FC%%', 'g77', 'f77']
+     executables = {
+         'version_cmd'  : [None, "-dumpversion"],
+         'compiler_f77' : [None, "-g", "-Wall", "-fno-second-underscore"],
+@@ -103,11 +103,13 @@ class GnuFCompiler(FCompiler):
+         for key in ['version_cmd', 'compiler_f77', 'linker_so', 'linker_exe']:
+             executables[key].append('-mno-cygwin')
+ 
+-    g2c = 'g2c'
++    g2c = '%%FC%%'
+     suggested_f90_compiler = 'gnu95'
+ 
+     def get_flags_linker_so(self):
+         opt = self.linker_so[1:]
++        if 'FFLAGS' in os.environ:
++            opt.append(os.environ['FFLAGS'])
+         if sys.platform == 'darwin':
+             target = os.environ.get('MACOSX_DEPLOYMENT_TARGET', None)
+             # If MACOSX_DEPLOYMENT_TARGET is set, we simply trust the value
+@@ -287,7 +289,7 @@ class Gnu95FCompiler(GnuFCompiler):
+                     self.executables[key].append('-mno-cygwin')
+         return v
+ 
+-    possible_executables = ['gfortran', 'f95']
++    possible_executables = ['%%FC%%', 'gfortran', 'f95']
+     executables = {
+         'version_cmd'  : ["<F90>", "-dumpversion"],
+         'compiler_f77' : [None, "-Wall", "-g", "-ffixed-form",

math/py-numpy/files/patch-numpy-distutils-system_info.py

@@ -0,0 +1,22 @@
+--- numpy/distutils/system_info.py.orig	2021-05-09 10:38:00 UTC
++++ numpy/distutils/system_info.py
+@@ -209,6 +209,8 @@ def _c_string_literal(s):
+     Convert a python string into a literal suitable for inclusion into C code
+     """
+     # only these three characters are forbidden in C strings
++    if s is None:
++        return '"None"'
+     s = s.replace('\\', r'\\')
+     s = s.replace('"',  r'\"')
+     s = s.replace('\n', r'\n')
+@@ -1322,8 +1324,8 @@ class atlas_info(system_info):
+     dir_env_var = 'ATLAS'
+     _lib_names = ['f77blas', 'cblas']
+     if sys.platform[:7] == 'freebsd':
+-        _lib_atlas = ['atlas_r']
+-        _lib_lapack = ['alapack_r']
++        _lib_atlas = ['atlas']
++        _lib_lapack = ['alapack']
+     else:
+         _lib_atlas = ['atlas']
+         _lib_lapack = ['lapack']

math/py-numpy/files/patch-numpy_core_src_common_npy__cpu__features.c

@@ -0,0 +1,47 @@
+--- numpy/core/src/common/npy_cpu_features.c.orig	2023-06-18 00:19:04 UTC
++++ numpy/core/src/common/npy_cpu_features.c
+@@ -570,6 +570,18 @@ npy__cpu_init_features(void)
+     #ifndef PPC_FEATURE2_ARCH_3_1
+         #define PPC_FEATURE2_ARCH_3_1  0x00040000
+     #endif
++#elif defined(__FreeBSD__)
++    #include <machine/cpu.h>
++    #include <sys/auxv.h>
++    #ifndef PPC_FEATURE2_ARCH_2_07
++        #define PPC_FEATURE2_ARCH_2_07 0x80000000
++    #endif
++    #ifndef PPC_FEATURE2_ARCH_3_00
++        #define PPC_FEATURE2_ARCH_3_00 0x00800000
++    #endif
++    #ifndef PPC_FEATURE2_ARCH_3_1
++        #define PPC_FEATURE2_ARCH_3_1  0x00040000
++    #endif
+ #endif
+ 
+ static void
+@@ -591,6 +603,25 @@ npy__cpu_init_features(void)
+ 
+     elf_aux_info(AT_HWCAP2, &hwcap, sizeof(hwcap));
+ #endif // __linux__
++    if (hwcap & PPC_FEATURE2_ARCH_3_1)
++    {
++        npy__cpu_have[NPY_CPU_FEATURE_VSX]  =
++        npy__cpu_have[NPY_CPU_FEATURE_VSX2] =
++        npy__cpu_have[NPY_CPU_FEATURE_VSX3] =
++        npy__cpu_have[NPY_CPU_FEATURE_VSX4] = 1;
++        return;
++    }
++    npy__cpu_have[NPY_CPU_FEATURE_VSX]  = 1;
++    npy__cpu_have[NPY_CPU_FEATURE_VSX2] = (hwcap & PPC_FEATURE2_ARCH_2_07) != 0;
++    npy__cpu_have[NPY_CPU_FEATURE_VSX3] = (hwcap & PPC_FEATURE2_ARCH_3_00) != 0;
++    npy__cpu_have[NPY_CPU_FEATURE_VSX4] = (hwcap & PPC_FEATURE2_ARCH_3_1) != 0;
++#elif defined(__FreeBSD__)
++    unsigned long hwcap;
++    elf_aux_info(AT_HWCAP, &hwcap, sizeof(hwcap));
++    if ((hwcap & PPC_FEATURE_HAS_VSX) == 0)
++        return;
++
++    elf_aux_info(AT_HWCAP2, &hwcap, sizeof(hwcap));
+     if (hwcap & PPC_FEATURE2_ARCH_3_1)
+     {
+         npy__cpu_have[NPY_CPU_FEATURE_VSX]  =

math/py-numpy/files/patch-numpy_f2py_f2py2e.py

@@ -0,0 +1,18 @@
+--- numpy/f2py/f2py2e.py.orig	2024-06-12 01:22:27 UTC
++++ numpy/f2py/f2py2e.py
+@@ -693,6 +693,7 @@ def run_compile():
+     extra_objects, sources = filter_files('', '[.](o|a|so|dylib)', sources)
+     library_dirs, sources = filter_files('-L', '', sources, remove_prefix=1)
+     libraries, sources = filter_files('-l', '', sources, remove_prefix=1)
++    extra_link_args, sources = filter_files('-Wl,|-B|-f','',sources,remove_prefix=0)
+     undef_macros, sources = filter_files('-U', '', sources, remove_prefix=1)
+     define_macros, sources = filter_files('-D', '', sources, remove_prefix=1)
+     for i in range(len(define_macros)):
+@@ -727,6 +728,7 @@ def run_compile():
+         define_macros,
+         undef_macros,
+         f2py_flags,
++	extra_link_args,
+         sysinfo_flags,
+         fc_flags,
+         flib_flags,

math/py-numpy/files/site.cfg

@@ -0,0 +1,10 @@
+[DEFAULT]
+library_dirs = /usr/lib:%%LOCALBASE%%/lib:%%GCCLIBDIR%%
+include_dirs = /usr/include:%%LOCALBASE%%/include:%%LOCALBASE%%/include/suitesparse
+src_dirs = %%LOCALBASE%%/src
+# search static libraries (.a) in preference to shared ones (.so)
+search_static_first = 0
+
+[%%BLASNAME%%]
+%%LIBRARIES%% = %%BLASLIBS%%
+lapack_libs = %%LAPACKLIBS%%

math/py-numpy/pkg-descr

@@ -0,0 +1,11 @@
+NumPy is the fundamental package for scientific computing with Python. It
+contains among other things:
+- a powerful N-dimensional array object
+- sophisticated (broadcasting) functions
+- tools for integrating C/C++ and Fortran code
+- useful linear algebra, Fourier transform, and random number capabilities
+
+Besides its obvious scientific uses, NumPy can also be used as an efficient
+multi-dimensional container of generic data. Arbitrary data-types can be
+defined. This allows NumPy to seamlessly and speedily integrate with a wide
+variety of databases.